B. Peer-reviewed publications

Graham, J. E., and B. J. Wilkinson.  1992.  Staphylococcus aureus osmoregulation: roles for choline, glycine betaine, and proline and taurine. J. Bacteriol. 174:2711-2716.

 

Kaenjak, A., J. E. Graham, and B. J. Wilkinson.  1993.  Choline transport activity in Staphylococcus aureus induced by osmotic stress and low phosphate. J. Bacteriol. 175:2400-2406.

 

K. W. Stimeling, J. E. Graham, A. Kaenjak, and B.J. Wilkinson.  1994.  Glycine betaine and Staphylococcus aureus osmoregulation: characteristics of a high affinity transport system. Microbiology. 140:3139-3144.

 

Graham, J. E., and J. P. Richardson.  1998.  rut sites in the nascent transcript mediate Rho-dependent transcription termination in vivo. J. Biol. Chem. 273:20764-20769.

 

Graham, J. E. and J. C. Clark-Curtiss.  1999.  Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS). P.N.A.S. 96:1554-11559.

 

Morrow, B. J., Graham, J. E. and R. Curtiss III.  1999.  Genomic subtractive hybridization and selective capture of transcribed sequences identify a novel Salmonella typhimurium fimbrial operon and putative transcriptional regulator that are absent from the S. typhi genome. Infect. Immun. 67: 5106-5116.

 

Daigle, F., Graham, J. E., and R. Curtiss III.  2001.  Identification of Salmonella typhi genes expressed within macrophages by selective capture of transcribed sequences (SCOTS).  Mol. Microbiol. 41:1211-22.

 

Liu, S., Graham, J. E., Bigelow, L., Morse, P. D.,  and B. J. Wilkinson. 2002. Identification of Listeria monocytogenes genes expressed in response to growth at low temperature. Appl. Env. Microbiol. 68:1697-1705.

 

Hou, J., Graham, J. E. and J. C. Clark-Curtiss.  2002.  Mycobacterium avium genes expressed during growth in human macrophages detected by selective capture of transcribed sequences (SCOTS). 2002. Infect. Immun. 70;3714-26.

 

Graham, J. E., Peek, R. M., Krishna, U. and T. L. Cover. 2002. Global analysis of Helicobacter pylori gene expression in human gastric mucosa. Gastroenterology 123:1637-1648.

 

Graham, J. E. 2003. Helicobacter pylori gene expression in vivo: a genomic perspective. Genome Letters 2:18-23.

 

Graham, J. E. 2004. Sequence specific Rho-RNA interactions in transcription termination. Nucleic Acids Research, 32:1-8.

 

Mukhopadhyay, S., Good, D., Miller, R.D., Graham, J.E., Mathews, S.A., Timms, P. and J.T. Summersgill. 2006. Identification of Chlamydia pneumoniae proteins in the transition from reticulate to elementary body formation. Molec. Cell. Proteomics. 12;2311-2318.

 

Abu-Zant, A., Asare, R., Graham, J. E., and Y. A. Abu Kwaik. 2006. A role for rpoS but not relA in modulation of phagosome biogenesis and adaptation to the phagosome microenvironment. Infect. Immun., 74:3021-26.., 72:4054-60.

 

Shanks, O. C., J. Santo Domingo, Lamendella, C., Kelty, C., Morgan, D., and J. E. Graham.  2006.  Competitive metagenoimc DNA hybridization identifies host-specific microbial genetic markers in cattle fecal samples. Appl. Env. Microbiol., 72;4054-60.

 

Abu-Zant, A. Jones, S., Asare, R., Suttles, J., Price, C. T. D., J. E. Graham., and Y. Abu Kwaik.  2007.  Anti-apopoptotic signaling by the Dot/Icm secretion system of Legionella pneumophila. Cell. Microbiol., 9;246-264.

 

Riordan, J. T., Arunachalam, M., Van Voorhies, W. Price, C. T. D., J. E. Graham, Wilkinson, B. J., and J. E. Gustafson.  2007.  The response of Staphylococcus aureus to salicylate challenge. J. Bacteriol., 189;220-227.

 

Shanks, O. C., J. Santo Domingo, Lu, J., Kelty, C., and J. E. Graham.  2007.  Identification of bacterial DNA markers for the detection of human fecal pollution in water. Appl. Env. Microbiol., 73;2416-2422.

 

Asare, R., Santic, M., Gobin, I., Doric, M., Suttles, J., Graham, J. E., Price, C. T. D., and Y. Abu Kwaik. 2007. Genetic susceptibility and caspase activation in mouse and human macrophages is distinct for Legionella longbeachae and L. pneumophila. Infec. Immun. 4:1933-45.

 

Wells, E. J., Franco, L. M., Price, C. T. D., Graham, J. E., and C. C. Barr. 2007. Effect of vitreous hemorrhage on susceptibility to experimental Staphylococcal endophthalmitis. Retina. 8:1125-30.

Habyarimana F., Al-Khodor S., Kalia A,. Graham, J. E. , Price C. T., Garcia M. T., Kwaik Y. A. 2008. Role for the Ankyrin eukaryotic-like genes of Legionella pneumophila in parasitism of protozoan hosts and human macrophages. Environ Microbiol. 10:1460-74.

 

Price. C. T. D., Bukka, A., Cynamon, M. and J. E. Graham. 2008. Glycine betaine uptake by the ProXVWZ ABC transporter contributes to the ability of Mycobacterium tuberculosis to initiate growth in the human macrophage. J. Bacteriology. 190:3955-3961.

 
Poret-Peterson, A. Graham, J. E., Gulledge, J., and M. G. Klotz. 2008. Transcription of nitrification genes by the methane-oxidizing bacterium, Methylococcus capsulatus strain Bath. Nature-ISMEJ. 3:1-8.

 

Dawson, D. R., Nydam, D., Price, C. T., Graham, J. E. , Cynamon, M., Divers, T. J, and J. B. Flamino. 2010. Effects of opsonization of Rhodococcus equi on bacterial viability and phagocyte activation. Am J Vet Res. 72:1465-1475.

 

Sheikh, A., Charles, R. C., Rollins, S., Harris, J. B., Bhuiyan, M. S., Khanam, F., Bukka, A., Kalsy, A., Porwolli, S.,Brooks, W. A., LaRocques, R. C., Hohmann, E., Cravioto, A., Logvinenk, T. Calderwood, S. B., McClelland, M. Graham, J. E., Qadri, F., and E. T. Ryan. 2010. Analysis of Salmonella enterica serotype Paratyphi A in the blood of bacteriemic patients in Bangladesh. PLoS Negl Trop Dis. 4: e908.

 

Graham, J. E., Wantland, N. B., Campbell, M., and M. G. Klotz. 2010. Characterizing bacterial gene expression in nitrogen cycle metabolism with RT-qPCR. Methods Enzymol. 496:345-72.

 

Sheikh, A., Charles, R. C., Sharmeen, N., Rollins, S., Harris, J. B., Bhuiyan, M. S., Khanam, F., Bukka, A., Kalsy, A., Porwolli, S.,Brooks, W. A., LaRocques, R. C., Hohmann, E., Cravioto, A., Logvinenko, T. Calderwood, S. B., McClelland, M. Graham, J. E., Qadri, F., and E. T. Ryan. 2011. In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh. PLoS Negl Trop Dis 5: e1419.

 

Brinkworth, A. J., Malcom, D. S., Roguska, K., Shahbazian, S., Graham, J. E., Hayward, R. D., and R. A. Carabeo. 2011. Chlamydia trachomatis Slc1 is a Type III secretion chaperone that enhances the translocation of its invasion effector substrate TARP. Mol. Microbiol. 82:131-144.

 

Bukka, A. Price. C. T., Kernodle, D. A. and J. E. Graham. 2011. Mycobacterium tuberculosis RNA expression patterns in sputum bacteria indicate secreted Esx factors contributing to growth are highly expressed in active disease. Frontiers in Microbiol. In Press.

 

C. Chapters, Reviews, Patents etc.

Graham, J. E. and J. C. Clark-Curtiss. 2000.  The identification of virulence determinants of Mycobacterium tuberculosis: new technologies for a difficult problem. Trends in Microbiol. 8:100.

 

Shanks, O., Santo Domingo, J., Lu, J. and J. E. Graham. 2005. Species-specific primer sets and identification of species-specific DNA sequences using genome fragment enrichment (GFE). University of Louisville and the U.S. Environmental Protection Agency, June 2, 2005 Registration #45,778.

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